J3_4W2G_015

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4W2G|1|BA|A|2530, 4W2G|1|BA|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2G_015 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.04

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4W2G|1|BA|C|2529
4W2G|1|BA|A|2530
4W2G|1|BA|U|2531
4W2G|1|BA|C|2532
*
4W2G|1|BA|G|2557
4W2G|1|BA|U|2558
4W2G|1|BA|U|2559
*
4W2G|1|BA|A|2573
4W2G|1|BA|U|2574
4W2G|1|BA|U|2575
4W2G|1|BA|A|2576
4W2G|1|BA|A|2577
4W2G|1|BA|A|2578
4W2G|1|BA|G|2579

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BO

50S Ribosomal Protein L14