3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAC*GGUAAG*CGAGG
Length
14 nucleotides
Bulged bases
4W2G|1|BA|A|2803
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2G_016 not in the Motif Atlas
Homologous match to J3_7RQB_013
Geometric discrepancy: 0.0961
The information below is about J3_7RQB_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_24416.1
Basepair signature
cWW-F-F-tWH-cWW-F-tHS-F-cWW
Number of instances in this motif group
2

Unit IDs

4W2G|1|BA|C|2802
4W2G|1|BA|A|2803
4W2G|1|BA|C|2804
*
4W2G|1|BA|G|2816
4W2G|1|BA|G|2817
4W2G|1|BA|U|2818
4W2G|1|BA|A|2819
4W2G|1|BA|A|2820
4W2G|1|BA|G|2821
*
4W2G|1|BA|C|2899
4W2G|1|BA|G|2900
4W2G|1|BA|A|2901
4W2G|1|BA|G|2902
4W2G|1|BA|G|2903

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BE
50S Ribosomal Protein L3
Chain BW
50S Ribosomal Protein L22

Coloring options:


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