J3_4W2G_047

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4W2G|1|BA|A|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2G_047 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0638

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4W2G|1|BA|G|1390
4W2G|1|BA|C|1391
4W2G|1|BA|G|1392
4W2G|1|BA|G|1393
4W2G|1|BA|G|1394
4W2G|1|BA|A|1395
4W2G|1|BA|C|1396
*
4W2G|1|BA|G|1427
4W2G|1|BA|G|1428
4W2G|1|BA|C|1429
4W2G|1|BA|A|1430
4W2G|1|BA|G|1431
*
4W2G|1|BA|C|1448
4W2G|1|BA|C|1449

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BX

50S Ribosomal Protein L23