J3_4W2G_061

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4W2G|1|DA|U|504, 4W2G|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2G_061 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0526

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4W2G|1|DA|G|30
4W2G|1|DA|C|31
*
4W2G|1|DA|G|474
4W2G|1|DA|U|475
4W2G|1|DA|G|476
4W2G|1|DA|A|477
4W2G|1|DA|A|478
4W2G|1|DA|A|479
4W2G|1|DA|A|480
4W2G|1|DA|G|481
4W2G|1|DA|A|482
4W2G|1|DA|A|483
4W2G|1|DA|C|484
*
4W2G|1|DA|G|496
4W2G|1|DA|A|497
4W2G|1|DA|G|498
4W2G|1|DA|U|499
4W2G|1|DA|G|500
4W2G|1|DA|A|501
4W2G|1|DA|A|502
4W2G|1|DA|A|503
4W2G|1|DA|U|504
4W2G|1|DA|A|505
4W2G|1|DA|G|506
4W2G|1|DA|A|507
4W2G|1|DA|G|508
4W2G|1|DA|C|509
4W2G|1|DA|C|510

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S Ribosomal Protein L20

Chain DW

50S Ribosomal Protein L22

Chain DY

50S Ribosomal Protein L24