J3_4W2H_012

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2H_012 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0534

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4W2H|1|BA|C|1344
4W2H|1|BA|G|1345
4W2H|1|BA|U|1346
4W2H|1|BA|A|1347
4W2H|1|BA|A|1348
4W2H|1|BA|G|1349
*
4W2H|1|BA|C|1671
4W2H|1|BA|G|1672
4W2H|1|BA|G|1673
*
4W2H|1|BA|U|1686
4W2H|1|BA|C|1687
4W2H|1|BA|A|1688
4W2H|1|BA|G|1689

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains