3D structure

PDB id
4W2I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGAGCUA*UAG*CGAG
Length
14 nucleotides
Bulged bases
4W2I|1|BA|G|733, 4W2I|1|BA|G|839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2I_010 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.039
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

4W2I|1|BA|C|730
4W2I|1|BA|G|731
4W2I|1|BA|A|732
4W2I|1|BA|G|733
4W2I|1|BA|C|734
4W2I|1|BA|U|735
4W2I|1|BA|A|736
*
4W2I|1|BA|U|820
4W2I|1|BA|A|821
4W2I|1|BA|G|822
*
4W2I|1|BA|C|838
4W2I|1|BA|G|839
4W2I|1|BA|A|840
4W2I|1|BA|G|841

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B7
50S Ribosomal Protein L34
Chain BD
50S Ribosomal Protein L2

Coloring options:


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