J3_4W2I_027

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4W2I|1|DA|G|686, 4W2I|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2I_027 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0582

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4W2I|1|DA|C|683
4W2I|1|DA|G|684
4W2I|1|DA|A|685
4W2I|1|DA|G|686
4W2I|1|DA|C|687
4W2I|1|DA|U|688
4W2I|1|DA|A|689
*
4W2I|1|DA|U|773
4W2I|1|DA|A|774
4W2I|1|DA|G|775
*
4W2I|1|DA|C|791
4W2I|1|DA|G|792
4W2I|1|DA|A|793
4W2I|1|DA|G|794

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DD

50S Ribosomal Protein L2