J3_4W2I_045
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4W2I|1|BA|U|474, 4W2I|1|BA|C|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2I_045 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0377
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4W2I|1|BA|C|32
4W2I|1|BA|U|33
4W2I|1|BA|C|34
4W2I|1|BA|G|35
*
4W2I|1|BA|C|471
4W2I|1|BA|G|472
4W2I|1|BA|A|473
4W2I|1|BA|U|474
4W2I|1|BA|A|475
4W2I|1|BA|G|476
4W2I|1|BA|C|477
4W2I|1|BA|G|478
4W2I|1|BA|C|479
4W2I|1|BA|A|480
4W2I|1|BA|C|481
4W2I|1|BA|C|482
4W2I|1|BA|A|483
4W2I|1|BA|G|484
4W2I|1|BA|U|485
4W2I|1|BA|A|486
4W2I|1|BA|C|487
*
4W2I|1|BA|G|494
4W2I|1|BA|G|495
4W2I|1|BA|A|496
4W2I|1|BA|A|497
4W2I|1|BA|A|498
4W2I|1|BA|G|499
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- 50S Ribosomal Protein L34
- Chain BF
- 50S Ribosomal Protein L4
- Chain BU
- 50S Ribosomal Protein L20
- Chain BX
- 50S Ribosomal Protein L23
Coloring options: