J3_4W2I_047

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4W2I|1|BA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2I_047 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0645

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4W2I|1|BA|U|258
4W2I|1|BA|A|259
4W2I|1|BA|A|260
4W2I|1|BA|A|261
4W2I|1|BA|C|262
*
4W2I|1|BA|G|282
4W2I|1|BA|G|283
4W2I|1|BA|G|284
4W2I|1|BA|U|285
4W2I|1|BA|C|286
4W2I|1|BA|G|287
4W2I|1|BA|U|288
4W2I|1|BA|G|289
*
4W2I|1|BA|C|396
4W2I|1|BA|G|397

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9