J3_4W2I_064
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4W2I|1|DA|C|34, 4W2I|1|DA|U|448, 4W2I|1|DA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2I_064 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0727
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4W2I|1|DA|C|32
4W2I|1|DA|U|33
4W2I|1|DA|C|34
4W2I|1|DA|G|35
*
4W2I|1|DA|C|445
4W2I|1|DA|G|446
4W2I|1|DA|A|447
4W2I|1|DA|U|448
4W2I|1|DA|A|449
4W2I|1|DA|G|450
4W2I|1|DA|C|451
4W2I|1|DA|G|452
4W2I|1|DA|C|453
4W2I|1|DA|A|454
4W2I|1|DA|C|455
4W2I|1|DA|C|456
4W2I|1|DA|A|457
4W2I|1|DA|G|458
4W2I|1|DA|U|459
4W2I|1|DA|A|460
4W2I|1|DA|C|461
*
4W2I|1|DA|G|468
4W2I|1|DA|G|469
4W2I|1|DA|A|470
4W2I|1|DA|A|471
4W2I|1|DA|A|472
4W2I|1|DA|G|473
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D7
- 50S Ribosomal Protein L34
- Chain DF
- 50S Ribosomal Protein L4
- Chain DU
- 50S Ribosomal Protein L20
- Chain DX
- 50S Ribosomal Protein L23
Coloring options: