J3_4W2I_068

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4W2I|1|DA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2I_068 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0592

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4W2I|1|DA|G|1344
4W2I|1|DA|C|1345
4W2I|1|DA|G|1346
4W2I|1|DA|G|1347
4W2I|1|DA|G|1348
4W2I|1|DA|A|1349
4W2I|1|DA|C|1350
*
4W2I|1|DA|G|1381
4W2I|1|DA|G|1382
4W2I|1|DA|C|1383
4W2I|1|DA|A|1384
4W2I|1|DA|G|1385
*
4W2I|1|DA|C|1402
4W2I|1|DA|C|1403

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DX

50S Ribosomal Protein L23