J3_4W4G_010

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4W4G|1|RA|G|686, 4W4G|1|RA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_010 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0528

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4W4G|1|RA|C|683
4W4G|1|RA|G|684
4W4G|1|RA|A|685
4W4G|1|RA|G|686
4W4G|1|RA|C|687
4W4G|1|RA|U|688
4W4G|1|RA|A|689
*
4W4G|1|RA|U|773
4W4G|1|RA|A|774
4W4G|1|RA|G|775
*
4W4G|1|RA|C|791
4W4G|1|RA|G|792
4W4G|1|RA|A|793
4W4G|1|RA|G|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2