J3_4W4G_017

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4W4G|1|RA|A|2518, 4W4G|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_017 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.112

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4W4G|1|RA|C|2517
4W4G|1|RA|A|2518
4W4G|1|RA|U|2519
4W4G|1|RA|C|2520
*
4W4G|1|RA|G|2545
4W4G|1|RA|U|2546
4W4G|1|RA|U|2547
*
4W4G|1|RA|A|2561
4W4G|1|RA|U|2562
4W4G|1|RA|U|2563
4W4G|1|RA|A|2564
4W4G|1|RA|A|2565
4W4G|1|RA|A|2566
4W4G|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14