J3_4W4G_022

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_022 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.124

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4W4G|1|XA|C|990
4W4G|1|XA|U|991
4W4G|1|XA|U|992
4W4G|1|XA|G|993
*
4W4G|1|XA|C|1045
4W4G|1|XA|A|1046
4W4G|1|XA|G|1047
*
4W4G|1|XA|C|1210
4W4G|1|XA|U|1211
4W4G|1|XA|U|1212
4W4G|1|XA|A|1213
4W4G|1|XA|C|1214
4W4G|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14

Chain XY

Host inhibition of growth B