3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
4W4G|1|RA|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W4G_050 not in the Motif Atlas
Homologous match to J3_9DFE_012
Geometric discrepancy: 0.0998
The information below is about J3_9DFE_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

4W4G|1|RA|G|1344
4W4G|1|RA|C|1345
4W4G|1|RA|G|1346
4W4G|1|RA|G|1347
4W4G|1|RA|G|1348
4W4G|1|RA|A|1349
4W4G|1|RA|C|1350
*
4W4G|1|RA|G|1381
4W4G|1|RA|G|1382
4W4G|1|RA|C|1383
4W4G|1|RA|A|1384
4W4G|1|RA|G|1385
*
4W4G|1|RA|C|1402
4W4G|1|RA|C|1403

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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