J3_4W4G_060

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_060 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0985

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4W4G|1|XA|C|936
4W4G|1|XA|A|937
4W4G|1|XA|A|938
4W4G|1|XA|G|939
*
4W4G|1|XA|C|1344
4W4G|1|XA|U|1345
4W4G|1|XA|A|1346
4W4G|1|XA|G|1347
4W4G|1|XA|U|1348
4W4G|1|XA|A|1349
4W4G|1|XA|A|1350
*
4W4G|1|XA|U|1372
4W4G|1|XA|G|1373
4W4G|1|XA|A|1374
4W4G|1|XA|A|1375
4W4G|1|XA|U|1376
4W4G|1|XA|A|1377
4W4G|1|XA|C|1378
4W4G|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9

Chain XW

Transfer RNA; tRNA