J3_4WCE_008

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WCE|1|X|A|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_008 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0604

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4WCE|1|X|C|2544
4WCE|1|X|A|2545
4WCE|1|X|U|2546
4WCE|1|X|C|2547
*
4WCE|1|X|G|2572
4WCE|1|X|U|2573
4WCE|1|X|U|2574
*
4WCE|1|X|A|2588
4WCE|1|X|U|2589
4WCE|1|X|U|2590
4WCE|1|X|A|2591
4WCE|1|X|A|2592
4WCE|1|X|A|2593
4WCE|1|X|G|2594

Current chains

Chain X

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L14