J3_4WCE_010

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

4WCE|1|X|U|549, 4WCE|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_010 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.066

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WCE|1|X|G|30
4WCE|1|X|C|31
*
4WCE|1|X|G|520
4WCE|1|X|U|521
4WCE|1|X|G|522
4WCE|1|X|A|523
4WCE|1|X|A|524
4WCE|1|X|A|525
4WCE|1|X|A|526
4WCE|1|X|G|527
4WCE|1|X|C|528
4WCE|1|X|A|529
4WCE|1|X|C|530
*
4WCE|1|X|G|541
4WCE|1|X|A|542
4WCE|1|X|G|543
4WCE|1|X|U|544
4WCE|1|X|G|545
4WCE|1|X|A|546
4WCE|1|X|A|547
4WCE|1|X|A|548
4WCE|1|X|U|549
4WCE|1|X|A|550
4WCE|1|X|G|551
4WCE|1|X|A|552
4WCE|1|X|A|553
4WCE|1|X|C|554
4WCE|1|X|C|555

Current chains

Chain X

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24