J3_4WCE_014

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

UAAG*CGCAAAC*GUA

Length

14 nucleotides

Bulged bases

4WCE|1|X|A|1653, 4WCE|1|X|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_014 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1555

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4WCE|1|X|U|1343
4WCE|1|X|A|1344
4WCE|1|X|A|1345
4WCE|1|X|G|1346
*
4WCE|1|X|C|1649
4WCE|1|X|G|1650
4WCE|1|X|C|1651
4WCE|1|X|A|1652
4WCE|1|X|A|1653
4WCE|1|X|A|1654
4WCE|1|X|C|1655
*
4WCE|1|X|G|1664
4WCE|1|X|U|1665
4WCE|1|X|A|1666

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34