J3_4WCE_015

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

4WCE|1|X|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_015 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.1048

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4WCE|1|X|U|1381
4WCE|1|X|C|1382
4WCE|1|X|G|1383
4WCE|1|X|G|1384
4WCE|1|X|G|1385
4WCE|1|X|U|1386
4WCE|1|X|C|1387
*
4WCE|1|X|G|1418
4WCE|1|X|A|1419
4WCE|1|X|U|1420
4WCE|1|X|A|1421
4WCE|1|X|A|1422
*
4WCE|1|X|U|1439
4WCE|1|X|A|1440

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23