J3_4WCE_018

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_018 not in the Motif Atlas

Homologous match to J3_4WF9_020

Geometric discrepancy: 0.065

The information below is about J3_4WF9_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4WCE|1|X|C|2816
4WCE|1|X|A|2817
*
4WCE|1|X|U|2826
4WCE|1|X|A|2827
4WCE|1|X|U|2828
4WCE|1|X|A|2829
4WCE|1|X|A|2830
4WCE|1|X|G|2831
*
4WCE|1|X|C|2909
4WCE|1|X|G|2910
4WCE|1|X|A|2911
4WCE|1|X|A|2912
4WCE|1|X|G|2913

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22