J3_4WF1_025
3D structure
- PDB id
- 4WF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to negamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.09 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WF1_025 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1178
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4WF1|1|CA|C|1063
4WF1|1|CA|G|1064
4WF1|1|CA|U|1065
4WF1|1|CA|C|1066
4WF1|1|CA|A|1067
4WF1|1|CA|G|1068
*
4WF1|1|CA|C|1107
4WF1|1|CA|G|1108
4WF1|1|CA|C|1109
4WF1|1|CA|A|1110
4WF1|1|CA|A|1111
4WF1|1|CA|C|1112
4WF1|1|CA|C|1113
*
4WF1|1|CA|G|1187
4WF1|1|CA|A|1188
4WF1|1|CA|U|1189
4WF1|1|CA|G|1190
4WF1|1|CA|A|1191
4WF1|1|CA|C|1192
4WF1|1|CA|G|1193
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CB
- 30S ribosomal protein S2
- Chain CC
- 30S ribosomal protein S3
- Chain CE
- 30S ribosomal protein S5
- Chain CG
- 30S ribosomal protein S7
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14
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