J3_4WF1_085

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_085 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0864

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4WF1|1|CA|C|936
4WF1|1|CA|A|937
4WF1|1|CA|A|938
4WF1|1|CA|G|939
*
4WF1|1|CA|C|1344
4WF1|1|CA|U|1345
4WF1|1|CA|A|1346
4WF1|1|CA|G|1347
4WF1|1|CA|U|1348
4WF1|1|CA|A|1349
4WF1|1|CA|A|1350
*
4WF1|1|CA|U|1372
4WF1|1|CA|G|1373
4WF1|1|CA|A|1374
4WF1|1|CA|A|1375
4WF1|1|CA|U|1376
4WF1|1|CA|A|1377
4WF1|1|CA|C|1378
4WF1|1|CA|G|1379

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9