J3_4WF1_093

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4WF1|1|DA|U|2833, 4WF1|1|DA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_093 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1835

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4WF1|1|DA|G|2812
4WF1|1|DA|A|2813
4WF1|1|DA|A|2814
4WF1|1|DA|C|2815
*
4WF1|1|DA|G|2831
4WF1|1|DA|U|2832
4WF1|1|DA|U|2833
4WF1|1|DA|G|2834
4WF1|1|DA|A|2835
4WF1|1|DA|U|2836
*
4WF1|1|DA|A|2882
4WF1|1|DA|A|2883
4WF1|1|DA|U|2884
4WF1|1|DA|G|2885
4WF1|1|DA|A|2886
4WF1|1|DA|A|2887
4WF1|1|DA|C|2888

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17