J3_4WFA_006

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

4WFA|1|X|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0752

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

4WFA|1|X|C|1342
4WFA|1|X|U|1343
4WFA|1|X|A|1344
4WFA|1|X|A|1345
4WFA|1|X|G|1346
*
4WFA|1|X|C|1649
4WFA|1|X|G|1650
4WFA|1|X|C|1651
4WFA|1|X|A|1652
4WFA|1|X|A|1653
4WFA|1|X|A|1654
4WFA|1|X|C|1655
*
4WFA|1|X|G|1664
4WFA|1|X|U|1665
4WFA|1|X|A|1666
4WFA|1|X|G|1667

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34