J3_4WFA_007

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUGC*GCGGCCUAAGGUAG*CGAAAG

Length

24 nucleotides

Bulged bases

4WFA|1|X|C|1952, 4WFA|1|X|A|1998

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_007 not in the Motif Atlas

Homologous match to J3_4WF9_006

Geometric discrepancy: 0.4311

The information below is about J3_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60034.1

Basepair signature

cWW-F-F-F-cHW-F-cWW-tSS-F-cSS-F-F-tWH-F-tHS-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4WFA|1|X|C|1860
4WFA|1|X|U|1861
4WFA|1|X|G|1862
4WFA|1|X|C|1863
*
4WFA|1|X|G|1931
4WFA|1|X|C|1932
4WFA|1|X|G|1933
4WFA|1|X|G|1934
4WFA|1|X|C|1935
4WFA|1|X|C|1952
4WFA|1|X|U|1953
4WFA|1|X|A|1954
4WFA|1|X|A|1955
4WFA|1|X|G|1956
4WFA|1|X|G|1957
4WFA|1|X|U|1958
4WFA|1|X|A|1959
4WFA|1|X|G|1960
*
4WFA|1|X|C|1994
4WFA|1|X|G|1995
4WFA|1|X|A|1996
4WFA|1|X|A|1997
4WFA|1|X|A|1998
4WFA|1|X|G|1999

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2