J3_4WFA_010

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WFA|1|X|A|2545, 4WFA|1|X|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0458

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WFA|1|X|C|2544
4WFA|1|X|A|2545
4WFA|1|X|U|2546
4WFA|1|X|C|2547
*
4WFA|1|X|G|2572
4WFA|1|X|U|2573
4WFA|1|X|U|2574
*
4WFA|1|X|A|2588
4WFA|1|X|U|2589
4WFA|1|X|U|2590
4WFA|1|X|A|2591
4WFA|1|X|A|2592
4WFA|1|X|A|2593
4WFA|1|X|G|2594

Current chains

Chain X

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L14