J3_4WFA_012

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

4WFA|1|X|U|549, 4WFA|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_012 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.0616

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WFA|1|X|G|30
4WFA|1|X|C|31
*
4WFA|1|X|G|520
4WFA|1|X|U|521
4WFA|1|X|G|522
4WFA|1|X|A|523
4WFA|1|X|A|524
4WFA|1|X|A|525
4WFA|1|X|A|526
4WFA|1|X|G|527
4WFA|1|X|C|528
4WFA|1|X|A|529
4WFA|1|X|C|530
*
4WFA|1|X|G|541
4WFA|1|X|A|542
4WFA|1|X|G|543
4WFA|1|X|U|544
4WFA|1|X|G|545
4WFA|1|X|A|546
4WFA|1|X|A|547
4WFA|1|X|A|548
4WFA|1|X|U|549
4WFA|1|X|A|550
4WFA|1|X|G|551
4WFA|1|X|A|552
4WFA|1|X|A|553
4WFA|1|X|C|554
4WFA|1|X|C|555

Current chains

Chain X

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24