J3_4WFA_014

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

4WFA|1|X|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_014 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.1075

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4WFA|1|X|U|1381
4WFA|1|X|C|1382
4WFA|1|X|G|1383
4WFA|1|X|G|1384
4WFA|1|X|G|1385
4WFA|1|X|U|1386
4WFA|1|X|C|1387
*
4WFA|1|X|G|1418
4WFA|1|X|A|1419
4WFA|1|X|U|1420
4WFA|1|X|A|1421
4WFA|1|X|A|1422
*
4WFA|1|X|U|1439
4WFA|1|X|A|1440

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23