J3_4WFB_005

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

4WFB|1|X|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFB_005 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0478

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

4WFB|1|X|C|1342
4WFB|1|X|U|1343
4WFB|1|X|A|1344
4WFB|1|X|A|1345
4WFB|1|X|G|1346
*
4WFB|1|X|C|1649
4WFB|1|X|G|1650
4WFB|1|X|C|1651
4WFB|1|X|A|1652
4WFB|1|X|A|1653
4WFB|1|X|A|1654
4WFB|1|X|C|1655
*
4WFB|1|X|G|1664
4WFB|1|X|U|1665
4WFB|1|X|A|1666
4WFB|1|X|G|1667

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34