J3_4WFB_008

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WFB|1|X|A|2545, 4WFB|1|X|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFB_008 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0472

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4WFB|1|X|C|2544
4WFB|1|X|A|2545
4WFB|1|X|U|2546
4WFB|1|X|C|2547
*
4WFB|1|X|G|2572
4WFB|1|X|U|2573
4WFB|1|X|U|2574
*
4WFB|1|X|A|2588
4WFB|1|X|U|2589
4WFB|1|X|U|2590
4WFB|1|X|A|2591
4WFB|1|X|A|2592
4WFB|1|X|A|2593
4WFB|1|X|G|2594

Current chains

Chain X

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L14