J3_4WFB_011

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

4WFB|1|X|U|549, 4WFB|1|X|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFB_011 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.0387

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WFB|1|X|G|30
4WFB|1|X|C|31
*
4WFB|1|X|G|520
4WFB|1|X|U|521
4WFB|1|X|G|522
4WFB|1|X|A|523
4WFB|1|X|A|524
4WFB|1|X|A|525
4WFB|1|X|A|526
4WFB|1|X|G|527
4WFB|1|X|C|528
4WFB|1|X|A|529
4WFB|1|X|C|530
*
4WFB|1|X|G|541
4WFB|1|X|A|542
4WFB|1|X|G|543
4WFB|1|X|U|544
4WFB|1|X|G|545
4WFB|1|X|A|546
4WFB|1|X|A|547
4WFB|1|X|A|548
4WFB|1|X|U|549
4WFB|1|X|A|550
4WFB|1|X|G|551
4WFB|1|X|A|552
4WFB|1|X|A|553
4WFB|1|X|C|554
4WFB|1|X|C|555

Current chains

Chain X

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24