J3_4WOI_011

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4WOI|1|BA|U|686, 4WOI|1|BA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_011 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3223

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WOI|1|BA|U|683
4WOI|1|BA|G|684
4WOI|1|BA|A|685
4WOI|1|BA|U|686
4WOI|1|BA|C|687
4WOI|1|BA|U|688
4WOI|1|BA|A|689
*
4WOI|1|BA|U|773
4WOI|1|BA|G|774
4WOI|1|BA|G|775
*
4WOI|1|BA|C|791
4WOI|1|BA|A|792
4WOI|1|BA|A|793
4WOI|1|BA|A|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2