J3_4WOI_024

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4WOI|1|CA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_024 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1942

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4WOI|1|CA|C|1306
4WOI|1|CA|A|1307
4WOI|1|CA|A|1308
4WOI|1|CA|G|1309
*
4WOI|1|CA|C|1605
4WOI|1|CA|C|1606
4WOI|1|CA|C|1607
4WOI|1|CA|A|1608
4WOI|1|CA|A|1609
4WOI|1|CA|A|1610
4WOI|1|CA|C|1611
*
4WOI|1|CA|G|1620
4WOI|1|CA|U|1621
4WOI|1|CA|G|1622

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L34