J3_4WOI_033

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_033 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0884

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WOI|1|DA|U|943
4WOI|1|DA|G|944
4WOI|1|DA|G|945
4WOI|1|DA|A|946
*
4WOI|1|DA|U|1235
4WOI|1|DA|A|1236
4WOI|1|DA|C|1237
*
4WOI|1|DA|G|1337
4WOI|1|DA|G|1338
4WOI|1|DA|A|1339
4WOI|1|DA|A|1340

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DM

30S ribosomal protein S13

Chain DW

Transfer RNA; tRNA