J3_4WOI_034

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

4WOI|1|DA|A|975, 4WOI|1|DA|G|976, 4WOI|1|DA|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_034 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.0853

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|DA|U|955
4WOI|1|DA|U|956
4WOI|1|DA|U|957
4WOI|1|DA|A|958
4WOI|1|DA|A|959
4WOI|1|DA|U|960
4WOI|1|DA|U|961
4WOI|1|DA|C|962
*
4WOI|1|DA|G|973
4WOI|1|DA|A|974
4WOI|1|DA|A|975
4WOI|1|DA|G|976
4WOI|1|DA|A|977
4WOI|1|DA|A|978
4WOI|1|DA|C|979
4WOI|1|DA|C|980
4WOI|1|DA|U|981
4WOI|1|DA|U|982
4WOI|1|DA|A|983
4WOI|1|DA|C|984
*
4WOI|1|DA|G|1221
4WOI|1|DA|G|1222
4WOI|1|DA|C|1223
4WOI|1|DA|U|1224
4WOI|1|DA|A|1225

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DJ

30S ribosomal protein S10

Chain DM

30S ribosomal protein S13

Chain DN

30S ribosomal protein S14

Chain DS

30S ribosomal protein S19