J3_4WOI_045

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_045 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0732

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4WOI|1|BA|G|30
4WOI|1|BA|C|31
*
4WOI|1|BA|G|474
4WOI|1|BA|C|475
4WOI|1|BA|G|476
4WOI|1|BA|A|477
4WOI|1|BA|A|478
4WOI|1|BA|A|479
4WOI|1|BA|A|480
4WOI|1|BA|G|481
*
4WOI|1|BA|C|509
4WOI|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BU

50S ribosomal protein L24