3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
4WOI|1|CA|A|504, 4WOI|1|CA|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WOI_055 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.0897
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4WOI|1|CA|G|30
4WOI|1|CA|C|31
*
4WOI|1|CA|G|474
4WOI|1|CA|C|475
4WOI|1|CA|G|476
4WOI|1|CA|A|477
4WOI|1|CA|A|478
4WOI|1|CA|A|479
4WOI|1|CA|A|480
4WOI|1|CA|G|481
4WOI|1|CA|A|482
4WOI|1|CA|A|483
4WOI|1|CA|C|484
*
4WOI|1|CA|G|496
4WOI|1|CA|A|497
4WOI|1|CA|G|498
4WOI|1|CA|U|499
4WOI|1|CA|G|500
4WOI|1|CA|A|501
4WOI|1|CA|A|502
4WOI|1|CA|A|503
4WOI|1|CA|A|504
4WOI|1|CA|A|505
4WOI|1|CA|G|506
4WOI|1|CA|A|507
4WOI|1|CA|A|508
4WOI|1|CA|C|509
4WOI|1|CA|C|510

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CQ
50S ribosomal protein L20
Chain CS
50S ribosomal protein L22
Chain CU
50S ribosomal protein L24

Coloring options:


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