3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4WOI|1|CA|U|34, 4WOI|1|CA|U|448, 4WOI|1|CA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4WOI_056 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0877
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4WOI|1|CA|C|32
4WOI|1|CA|C|33
4WOI|1|CA|U|34
4WOI|1|CA|G|35
*
4WOI|1|CA|C|445
4WOI|1|CA|G|446
4WOI|1|CA|A|447
4WOI|1|CA|U|448
4WOI|1|CA|A|449
4WOI|1|CA|G|450
4WOI|1|CA|U|451
4WOI|1|CA|G|452
4WOI|1|CA|A|453
4WOI|1|CA|A|454
4WOI|1|CA|C|455
4WOI|1|CA|C|456
4WOI|1|CA|A|457
4WOI|1|CA|G|458
4WOI|1|CA|U|459
4WOI|1|CA|A|460
4WOI|1|CA|C|461
*
4WOI|1|CA|G|468
4WOI|1|CA|G|469
4WOI|1|CA|A|470
4WOI|1|CA|A|471
4WOI|1|CA|A|472
4WOI|1|CA|G|473

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain C2
50S ribosomal protein L34
Chain CE
50S ribosomal protein L4
Chain CQ
50S ribosomal protein L20
Chain CT
50S ribosomal protein L23

Coloring options:


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