J3_4WPO_008

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4WPO|1|AA|A|2530, 4WPO|1|AA|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_008 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0401

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4WPO|1|AA|C|2529
4WPO|1|AA|A|2530
4WPO|1|AA|U|2531
4WPO|1|AA|C|2532
*
4WPO|1|AA|G|2557
4WPO|1|AA|U|2558
4WPO|1|AA|U|2559
*
4WPO|1|AA|A|2573
4WPO|1|AA|U|2574
4WPO|1|AA|U|2575
4WPO|1|AA|A|2576
4WPO|1|AA|A|2577
4WPO|1|AA|A|2578
4WPO|1|AA|G|2579

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L14