J3_4WPO_009

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

4WPO|1|AA|A|2803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_009 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.0947

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4WPO|1|AA|C|2802
4WPO|1|AA|A|2803
4WPO|1|AA|C|2804
*
4WPO|1|AA|G|2816
4WPO|1|AA|G|2817
4WPO|1|AA|U|2818
4WPO|1|AA|A|2819
4WPO|1|AA|A|2820
4WPO|1|AA|G|2821
*
4WPO|1|AA|C|2899
4WPO|1|AA|G|2900
4WPO|1|AA|A|2901
4WPO|1|AA|G|2902
4WPO|1|AA|G|2903

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AW

50S ribosomal protein L22