J3_4WPO_040

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4WPO|1|AA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_040 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1129

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WPO|1|AA|U|258
4WPO|1|AA|A|259
4WPO|1|AA|A|260
4WPO|1|AA|A|261
4WPO|1|AA|C|262
*
4WPO|1|AA|G|282
4WPO|1|AA|G|283
4WPO|1|AA|G|284
4WPO|1|AA|U|285
4WPO|1|AA|C|286
4WPO|1|AA|G|287
4WPO|1|AA|U|288
4WPO|1|AA|G|289
*
4WPO|1|AA|C|396
4WPO|1|AA|G|397

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains