J3_4WPO_041

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4WPO|1|AA|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_041 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0492

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WPO|1|AA|C|321
4WPO|1|AA|G|322
4WPO|1|AA|A|323
4WPO|1|AA|A|324
4WPO|1|AA|G|325
*
4WPO|1|AA|C|340
4WPO|1|AA|G|341
4WPO|1|AA|C|342
4WPO|1|AA|C|343
4WPO|1|AA|A|344
4WPO|1|AA|G|345
4WPO|1|AA|A|346
4WPO|1|AA|G|347
4WPO|1|AA|A|348
4WPO|1|AA|G|349
*
4WPO|1|AA|C|361
4WPO|1|AA|G|362
4WPO|1|AA|U|363
4WPO|1|AA|A|364
4WPO|1|AA|G|365

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24