J3_4WPO_042

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4WPO|1|AA|A|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_042 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0585

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4WPO|1|AA|G|1390
4WPO|1|AA|C|1391
4WPO|1|AA|G|1392
4WPO|1|AA|G|1393
4WPO|1|AA|G|1394
4WPO|1|AA|A|1395
4WPO|1|AA|C|1396
*
4WPO|1|AA|G|1427
4WPO|1|AA|G|1428
4WPO|1|AA|C|1429
4WPO|1|AA|A|1430
4WPO|1|AA|G|1431
*
4WPO|1|AA|C|1448
4WPO|1|AA|C|1449

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L23