J3_4WPO_056

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WPO|1|CA|U|504, 4WPO|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WPO_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0555

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WPO|1|CA|G|30
4WPO|1|CA|C|31
*
4WPO|1|CA|G|474
4WPO|1|CA|U|475
4WPO|1|CA|G|476
4WPO|1|CA|A|477
4WPO|1|CA|A|478
4WPO|1|CA|A|479
4WPO|1|CA|A|480
4WPO|1|CA|G|481
4WPO|1|CA|A|482
4WPO|1|CA|A|483
4WPO|1|CA|C|484
*
4WPO|1|CA|G|496
4WPO|1|CA|A|497
4WPO|1|CA|G|498
4WPO|1|CA|U|499
4WPO|1|CA|G|500
4WPO|1|CA|A|501
4WPO|1|CA|A|502
4WPO|1|CA|A|503
4WPO|1|CA|U|504
4WPO|1|CA|A|505
4WPO|1|CA|G|506
4WPO|1|CA|A|507
4WPO|1|CA|G|508
4WPO|1|CA|C|509
4WPO|1|CA|C|510

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L20

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24