J3_4WQ1_012

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

4WQ1|1|14|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_012 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0772

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQ1|1|14|C|1298
4WQ1|1|14|G|1299
4WQ1|1|14|U|1300
4WQ1|1|14|A|1301
4WQ1|1|14|A|1302
4WQ1|1|14|G|1303
*
4WQ1|1|14|C|1625
4WQ1|1|14|G|1626
4WQ1|1|14|G|1627
*
4WQ1|1|14|U|1639
4WQ1|1|14|C|1640
4WQ1|1|14|A|1641
4WQ1|1|14|G|1642

Current chains

Chain 14

23S ribosomal RNA

Nearby chains