J3_4WQ1_044

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4WQ1|1|14|U|504, 4WQ1|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_044 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0543

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WQ1|1|14|G|30
4WQ1|1|14|C|31
*
4WQ1|1|14|G|474
4WQ1|1|14|U|475
4WQ1|1|14|G|476
4WQ1|1|14|A|477
4WQ1|1|14|A|478
4WQ1|1|14|A|479
4WQ1|1|14|A|480
4WQ1|1|14|G|481
4WQ1|1|14|A|482
4WQ1|1|14|A|483
4WQ1|1|14|C|484
*
4WQ1|1|14|G|496
4WQ1|1|14|A|497
4WQ1|1|14|G|498
4WQ1|1|14|U|499
4WQ1|1|14|G|500
4WQ1|1|14|A|501
4WQ1|1|14|A|502
4WQ1|1|14|A|503
4WQ1|1|14|U|504
4WQ1|1|14|A|505
4WQ1|1|14|G|506
4WQ1|1|14|A|507
4WQ1|1|14|G|508
4WQ1|1|14|C|509
4WQ1|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24