J3_4WQ1_073

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_073 not in the Motif Atlas

Homologous match to J3_4WF9_020

Geometric discrepancy: 0.2155

The information below is about J3_4WF9_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4WQ1|1|1H|C|2789
4WQ1|1|1H|A|2790
4WQ1|1|1H|C|2791
*
4WQ1|1|1H|G|2805
4WQ1|1|1H|G|2807
4WQ1|1|1H|U|2808
4WQ1|1|1H|A|2809
4WQ1|1|1H|A|2810
4WQ1|1|1H|G|2811
*
4WQ1|1|1H|C|2889
4WQ1|1|1H|G|2891
4WQ1|1|1H|A|2892
4WQ1|1|1H|G|2893
4WQ1|1|1H|G|2894

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3