J3_4WQF_003

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQF_003 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1271

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4WQF|1|AA|G|1101
4WQF|1|AA|G|1102
4WQF|1|AA|A|1103
*
4WQF|1|AA|U|1127
4WQF|1|AA|U|1128
4WQF|1|AA|U|1129
4WQF|1|AA|A|1130
4WQF|1|AA|A|1131
4WQF|1|AA|A|1132
4WQF|1|AA|G|1133
*
4WQF|1|AA|C|1148
4WQF|1|AA|A|1149
4WQF|1|AA|C|1150

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AK

50S ribosomal protein L10

Chain AL

50S ribosomal protein L11