J3_4WQF_019

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WQF|1|CA|G|686, 4WQF|1|CA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQF_019 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0577

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQF|1|CA|C|683
4WQF|1|CA|G|684
4WQF|1|CA|A|685
4WQF|1|CA|G|686
4WQF|1|CA|C|687
4WQF|1|CA|U|688
4WQF|1|CA|A|689
*
4WQF|1|CA|U|773
4WQF|1|CA|A|774
4WQF|1|CA|G|775
*
4WQF|1|CA|C|791
4WQF|1|CA|G|792
4WQF|1|CA|A|793
4WQF|1|CA|G|794

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2